STRINGSTRING
PP1S199_126V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S199_126V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S199_126V6.1Predicted protein (71 aa)    
Predicted Functional Partners:
PP1S895_6V6.1
Predicted protein (69 aa)
     
   
  0.539
PP1S51_32V6.1
Predicted protein (62 aa)
     
   
  0.539
PP1S75_42V6.1
Predicted protein (84 aa)
     
   
  0.538
PP1S38_289V6.1
Predicted protein (241 aa)
           
  0.487
PP1S2_482V6.1
Predicted protein (240 aa)
           
  0.487
PP1S79_105V6.1
Predicted protein (405 aa)
           
  0.471
PP1S28_171V6.1
Predicted protein (295 aa)
           
  0.471
PP1S131_195V6.1
Predicted protein (98 aa)
     
   
  0.442
PP1S395_22V6.1
Predicted protein (74 aa)
     
   
  0.430
PP1S144_19V6.1
Predicted protein (77 aa)
     
   
  0.430
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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