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STRINGSTRING
PP1S200_62V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S200_62V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S200_62V6.1Predicted protein (633 aa)    
Predicted Functional Partners:
PP1S199_134V6.1
Predicted protein; Belongs to the peptidase C1 family (370 aa)
       
 
  0.694
PP1S262_68V6.1
annotation not available (82 aa)
           
  0.621
PP1S14_333V6.1
Predicted protein (591 aa)
       
 
  0.587
PP1S24_39V6.1
Predicted protein (434 aa)
     
   
  0.522
PP1S189_18V6.1
Predicted protein (502 aa)
     
   
  0.522
PP1S75_108V6.1
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family (184 aa)
           
  0.499
PP1S11_114V6.1
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family (184 aa)
           
  0.499
SYP6A2
Qc-SNARE, SYP6/Tlg1p/Syntaxin 6 family (238 aa)
           
  0.418
SYP61A1
Qc-SNARE, SYP6/Tlg1p/Syntaxin 6 family (241 aa)
           
  0.418
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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