STRINGSTRING
PP1S201_114V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S201_114V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
Databases
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[Homology]
Score
PP1S201_114V6.1Predicted protein (718 aa)    
Predicted Functional Partners:
PP1S243_58V6.1
Predicted protein (1315 aa)
     
   
  0.570
PP1S475_4V6.1
Annotation not available (974 aa)
     
   
  0.548
PP1S9_477V6.1
Annotation not available (1376 aa)
     
   
  0.536
PP1S155_86V6.2
Predicted protein (710 aa)
     
   
  0.493
PP1S15_297V6.1
Annotation not available (658 aa)
     
   
  0.479
PP1S93_66V6.1
Annotation not available (890 aa)
     
   
  0.471
PP1S42_140V6.1
Rad51B protein (342 aa)
     
   
  0.466
PP1S31_236V6.1
Rad51A protein (342 aa)
     
   
  0.466
PP1S95_66V6.1
Annotation not available (1327 aa)
     
   
  0.457
FEN1-B
Flap endonuclease 1-B; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as [...] (394 aa)
     
   
  0.444
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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