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STRINGSTRING
PP1S201_114V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S201_114V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S201_114V6.1Predicted protein (718 aa)    
Predicted Functional Partners:
PP1S9_477V6.1
annotation not available (1376 aa)
     
   
  0.928
PP1S475_4V6.1
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (974 aa)
     
   
  0.920
PP1S243_58V6.1
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily (1315 aa)
     
   
  0.887
PP1S189_79V6.1
annotation not available (55 aa)
           
  0.783
PP1S15_297V6.1
annotation not available (658 aa)
           
  0.781
PP1S243_60V6.1
Predicted protein (161 aa)
           
  0.778
PP1S3_567V6.1
Predicted protein (1119 aa)
           
  0.777
PP1S14_84V6.1
Predicted protein (227 aa)
           
  0.770
PP1S41_312V6.1
annotation not available (1356 aa)
           
  0.768
PP1S9_248V6.1
annotation not available (314 aa)
           
  0.765
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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