STRINGSTRING
PP1S203_68V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S203_68V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S203_68V6.1Predicted protein (982 aa)    
Predicted Functional Partners:
PP1S1_162V6.2
Annotation not available (516 aa)
     
  0.964
HAM1503
Histone acetyltransferase (202 aa)
     
  0.964
HAM1501
Histone acetyltransferase (462 aa)
     
  0.964
PP1S363_44V6.1
Predicted protein (159 aa)
       
  0.901
PP1S178_70V6.1
Predicted protein (159 aa)
       
  0.901
PP1S277_88V6.1
Predicted protein (260 aa)
     
  0.771
PP1S173_3V6.1
Predicted protein (263 aa)
     
  0.771
PP1S229_59V6.1
Predicted protein (1035 aa)
     
    0.715
PpDCL1a
DsRNA-specific nuclease dicer and related ribonuclease (1866 aa)
     
 
  0.707
PP1S149_37V6.1
Predicted protein (1403 aa)
     
 
  0.707
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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