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STRINGSTRING
PP1S20_351V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S20_351V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S20_351V6.1Predicted protein (599 aa)    
Predicted Functional Partners:
PP1S358_20V6.1
Predicted protein (491 aa)
   
  0.999
PP1S169_50V6.1
Predicted protein (480 aa)
   
  0.999
PP1S64_89V6.1
annotation not available (232 aa)
   
 
  0.993
PP1S197_25V6.1
annotation not available (1186 aa)
   
 
  0.993
PP1S26_83V6.1
annotation not available (1151 aa)
   
 
  0.992
PP1S195_98V6.1
Predicted protein (500 aa)
     
 
  0.977
PP1S1_785V6.1
annotation not available (279 aa)
   
   
  0.977
PP1S107_189V6.1
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (811 aa)
   
   
  0.977
PP1S22_311V6.1
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (414 aa)
   
   
  0.973
PP1S7_222V6.2
Probable alanine--tRNA ligase, chloroplastic; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family (1024 aa)
   
 
  0.971
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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