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STRINGSTRING
PP1S20_93V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S20_93V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S20_93V6.1Predicted protein (275 aa)    
Predicted Functional Partners:
PP1S185_119V6.1
Predicted protein (264 aa)
           
  0.582
PP1S101_227V6.1
Predicted protein (317 aa)
           
  0.582
PP1S64_217V6.1
Predicted protein (406 aa)
       
 
  0.563
PP1S341_69V6.1
Predicted protein (361 aa)
       
 
  0.563
PP1S215_30V6.1
Predicted protein (371 aa)
       
 
  0.563
PP1S64_163V6.1
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate (517 aa)
           
  0.529
PP1S26_228V6.1
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate (482 aa)
           
  0.529
PP1S242_13V6.2
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate (477 aa)
           
  0.529
PP1S37_345V6.1
Predicted protein (451 aa)
           
  0.525
PP1S15_233V6.1
tRNA (guanine(26)-N(2))-dimethyltransferase (715 aa)
           
  0.525
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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