STRINGSTRING
SNT1504 protein (Physcomitrella patens) - STRING interaction network
"SNT1504" - Histone deacetylase complex, SIN3 component in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNT1504Histone deacetylase complex, SIN3 component (1068 aa)    
Predicted Functional Partners:
HDA1504
Histone deacetylase (723 aa)
     
  0.979
HDA1505
Predicted protein (774 aa)
     
  0.979
HDA1506
Histone deacetylase (431 aa)
     
  0.979
PP1S355_21V6.1
Annotation not available (752 aa)
     
  0.962
PP1S2_36V6.1
Annotation not available (563 aa)
     
  0.962
PP1S407_3V6.1
Predicted protein (303 aa)
       
  0.961
PP1S39_261V6.1
Predicted protein (303 aa)
       
  0.961
PP1S42_67V6.1
Predicted protein (2040 aa)
     
  0.956
PP1S138_176V6.1
Predicted protein (2032 aa)
     
  0.956
PP1S55_45V6.1
Predicted protein (704 aa)
     
 
  0.950
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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