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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S213_4V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S213_4V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S213_4V6.1annotation not available (954 aa)    
Predicted Functional Partners:
PP1S71_240V6.1
Predicted protein (2274 aa)
     
 
  0.978
PP1S20_50V6.1
annotation not available (2209 aa)
     
 
  0.978
PP1S60_116V6.1
Predicted protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family (539 aa)
     
   
  0.888
PP1S308_21V6.1
Endoglucanase (532 aa)
     
   
  0.888
PP1S43_209V6.2
Predicted protein (550 aa)
     
        0.885
PP1S194_186V6.1
Predicted protein (206 aa)
     
        0.885
PP1S54_279V6.2
annotation not available (200 aa)
     
        0.868
PP1S39_388V6.1
Predicted protein (188 aa)
     
        0.868
PP1S37_79V6.1
Predicted protein (188 aa)
     
        0.868
PP1S217_49V6.1
Predicted protein (190 aa)
     
        0.868
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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