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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S215_5V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S215_5V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S215_5V6.1Predicted protein (627 aa)    
Predicted Functional Partners:
PP1S164_93V6.1
Predicted protein (420 aa)
           
  0.891
PP1S162_11V6.1
Predicted protein (268 aa)
           
  0.887
PP1S297_20V6.1
Predicted protein (477 aa)
           
  0.779
PP1S15_316V6.2
Predicted protein (479 aa)
           
  0.779
PP1S8_124V6.1
Predicted protein (542 aa)
           
  0.743
PP1S55_252V6.1
annotation not available (384 aa)
           
  0.743
PP1S156_164V6.1
annotation not available (583 aa)
           
  0.681
PP1S362_21V6.1
annotation not available (548 aa)
           
  0.565
PP1S145_26V6.3
Predicted protein (750 aa)
           
  0.561
PP1S74_27V6.1
annotation not available (672 aa)
           
  0.546
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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