STRINGSTRING
PP1S216_42V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S216_42V6.1" - Pectinesterase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S216_42V6.1Pectinesterase (653 aa)    
Predicted Functional Partners:
PP1S16_66V6.1
Annotation not available (509 aa)
 
   
  0.977
PP1S37_38V6.1
Predicted protein (364 aa)
 
   
  0.949
PP1S45_65V6.1
Predicted protein (469 aa)
 
   
  0.943
PP1S563_1V6.2
Predicted protein (421 aa)
 
   
  0.942
PP1S173_162V6.1
Predicted protein (425 aa)
 
   
  0.941
PP1S9_110V6.1
Annotation not available (551 aa)
       
  0.928
PP1S92_84V6.1
Predicted protein (564 aa)
       
  0.928
PP1S84_82V6.1
Predicted protein (427 aa)
       
  0.928
PP1S67_160V6.1
Predicted protein (408 aa)
       
  0.928
PP1S61_217V6.1
Predicted protein (569 aa)
       
  0.928
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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