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ppabcd7 protein (Physcomitrella patens) - STRING interaction network
"ppabcd7" - ATP-binding cassette transporter, subfamily D, member 7, group PMP protein PpABCD7 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppabcd7ATP-binding cassette transporter, subfamily D, member 7, group PMP protein PpABCD7 (1070 aa)    
Predicted Functional Partners:
PP1S9_63V6.2
Annotation not available (399 aa)
     
  0.787
PP1S16_308V6.1
Annotation not available (305 aa)
     
  0.787
PP1S114_119V6.1
Predicted protein (392 aa)
     
  0.787
PP1S59_304V6.1
Annotation not available (84 aa)
     
  0.754
PP1S358_23V6.1
Predicted protein (263 aa)
     
  0.754
PP1S150_16V6.1
Predicted protein (763 aa)
     
   
  0.589
PP1S9_248V6.1
Annotation not available (314 aa)
       
      0.582
PP1S98_157V6.2
RecA (435 aa)
       
      0.582
PP1S42_140V6.1
Rad51B protein (342 aa)
       
      0.582
PP1S412_17V6.1
RecA (460 aa)
       
      0.582
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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