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VAMP72A1 protein (Physcomitrella patens) - STRING interaction network
"VAMP72A1" - R-SNARE, VAMP72-family in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAMP72A1R-SNARE, VAMP72-family (222 aa)    
Predicted Functional Partners:
SNAP30
Qb+Qc-SNARE, SNAP33-family (271 aa)
     
  0.979
SNAP29
Qb+Qc-SNARE, SNAP33-family (269 aa)
     
  0.979
BET1A2
Qc-SNARE, BET1-family (123 aa)
     
  0.975
BET1A1
Qc-SNARE, BET1-family (125 aa)
     
  0.975
SYP3A1
Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type (357 aa)
     
  0.974
SYP3A2
Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type (355 aa)
     
  0.974
VTI1A4
Qb-SNARE, VTI1-family (221 aa)
     
  0.972
VTI1A3
Qb-SNARE, VTI1-family (220 aa)
     
  0.972
VTI1A1
Qb-SNARE, VTI1-family (220 aa)
     
  0.972
VTI1A2
Qb-SNARE, VTI1-family (221 aa)
     
  0.972
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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