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STRINGSTRING
PP1S21_13V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S21_13V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S21_13V6.1Predicted protein (491 aa)    
Predicted Functional Partners:
PP1S246_110V6.1
Predicted protein (435 aa)
           
  0.835
PP1S161_29V6.1
Predicted protein (441 aa)
           
  0.835
PP1S44_263V6.1
annotation not available (352 aa)
           
  0.781
ppabci2
ATP-binding cassette transporter, subfamily I, member 2, ABC component protein PpABCI2 (348 aa)
           
  0.781
PP1S19_32V6.1
annotation not available (535 aa)
           
  0.768
PP1S16_27V6.1
annotation not available (301 aa)
     
   
  0.621
PP1S137_134V6.1
Predicted protein (303 aa)
     
   
  0.621
PP1S85_94V6.1
Predicted protein (346 aa)
           
  0.603
PP1S20_332V6.1
annotation not available (339 aa)
           
  0.603
PP1S185_81V6.1
Predicted protein (348 aa)
           
  0.603
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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