STRINGSTRING
PP1S223_54V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S223_54V6.1" - DNA ligase in Physcomitrella patens
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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[Homology]
Score
PP1S223_54V6.1DNA ligase (776 aa)    
Predicted Functional Partners:
PP1S355_49V6.1
Predicted protein (727 aa)
   
   
  0.996
PP1S503_12V6.1
Predicted protein (226 aa)
     
   
  0.995
PP1S46_194V6.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.992
PP1S227_112V6.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (224 aa)
     
  0.991
PP1S121_27V6.1
Predicted protein; Single-stranded DNA-dependent ATP-dependent helicase (681 aa)
     
  0.972
PP1S225_68V6.1
Predicted protein (992 aa)
     
  0.965
PP1S96_143V6.1
Predicted protein (338 aa)
     
  0.948
PP1S135_65V6.1
Predicted protein (2897 aa)
     
 
  0.945
FEN1-B
Flap endonuclease 1-B; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as [...] (394 aa)
 
  0.942
FEN1-A
Flap endonuclease 1-A; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as [...] (394 aa)
 
  0.941
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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