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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
CHR1503 protein (Physcomitrella patens) - STRING interaction network
"CHR1503" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHR1503annotation not available (3092 aa)    
Predicted Functional Partners:
PP1S54_136V6.1
annotation not available (1001 aa)
     
 
  0.952
PP1S61_39V6.1
Predicted protein (2124 aa)
     
 
  0.902
PP1S8_180V6.2
Predicted protein (1605 aa)
     
   
  0.889
PP1S355_21V6.1
Predicted protein (752 aa)
     
 
  0.865
PP1S2_36V6.1
annotation not available (563 aa)
     
 
  0.865
GTB1502
annotation not available (1833 aa)
   
 
  0.825
GTB1501
annotation not available (1648 aa)
   
 
  0.825
HDA1504
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (723 aa)
     
 
  0.815
HDA1505
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (774 aa)
     
 
  0.815
HDA1506
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (431 aa)
     
 
  0.815
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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