STRINGSTRING
PP1S224_116V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S224_116V6.1" - Chloroplast unusual positioning 1A in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S224_116V6.1Chloroplast unusual positioning 1A (1130 aa)    
Predicted Functional Partners:
PP1S91_120V6.1
Predicted protein (1365 aa)
           
  0.468
PP1S31_335V6.1
Predicted protein (1159 aa)
           
  0.468
PP1S311_34V6.1
Annotation not available (1348 aa)
           
  0.468
PP1S223_90V6.1
Predicted protein (1544 aa)
           
  0.468
PP1S13_405V6.1
Predicted protein (1203 aa)
           
  0.468
PhotB1
PHOTB1 phototropin B1 blue light photoreceptor (1133 aa)
     
   
  0.450
PHOTA3
PHOTA3 phototropin photoreceptor (1098 aa)
     
   
  0.450
PP1S59_175V6.1
PHOTA4 phototropin blue light photoreceptor (868 aa)
     
   
  0.450
PHOTB2
PHOTB2 phototropin B2 blue light photoreceptor (1171 aa)
     
   
  0.450
PhotA2
PHOTA2 phototropin A2 blue light photoreceptor (1095 aa)
     
   
  0.450
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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