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STRINGSTRING
PP1S224_71V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S224_71V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S224_71V6.1Predicted protein (377 aa)    
Predicted Functional Partners:
PP1S29_19V6.1
annotation not available (822 aa)
     
 
  0.954
PP1S52_171V6.1
annotation not available (965 aa)
     
 
  0.952
PP1S47_223V6.1
Predicted protein (691 aa)
     
 
  0.950
PP1S54_78V6.2
Predicted protein (639 aa)
     
 
  0.949
PP1S409_13V6.1
Predicted protein; Belongs to the DEAD box helicase family (847 aa)
     
 
  0.946
PP1S241_31V6.1
Predicted protein (697 aa)
     
 
  0.944
PP1S41_237V6.1
annotation not available (664 aa)
     
 
  0.943
PP1S20_267V6.1
Predicted protein (540 aa)
     
 
  0.938
PP1S641_1V6.1
Predicted protein (807 aa)
     
 
  0.936
PP1S93_182V6.1
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1046 aa)
   
 
  0.936
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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