STRINGSTRING
PP1S226_114V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S226_114V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S226_114V6.1Predicted protein (242 aa)    
Predicted Functional Partners:
PP1S106_134V6.1
Predicted protein (329 aa)
     
      0.977
PP1S3_333V6.1
Ribosome biogenesis protein BOP1 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (178 aa)
     
      0.961
PP1S3_332V6.1
Annotation not available (606 aa)
     
      0.961
PP1S18_81V6.1
Predicted protein (920 aa)
     
      0.960
PP1S91_142V6.1
Predicted protein (599 aa)
     
      0.955
PP1S197_80V6.1
Predicted protein (377 aa)
     
      0.955
PP1S144_97V6.1
Predicted protein (595 aa)
     
      0.955
PP1S391_22V6.1
Predicted protein (347 aa)
     
      0.952
PP1S35_41V6.1
Predicted protein (351 aa)
     
      0.952
PP1S263_19V6.1
Predicted protein (641 aa)
     
      0.930
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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