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STRINGSTRING
VAMP72B1 protein (Physcomitrella patens) - STRING interaction network
"VAMP72B1" - R-SNARE, VAMP72-family in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAMP72B1R-SNARE, VAMP72-family ; Belongs to the synaptobrevin family (235 aa)    
Predicted Functional Partners:
PP1S223_98V6.1
Predicted protein (837 aa)
       
 
  0.823
VPS33
SM/Sec1-family protein ; Belongs to the STXBP/unc-18/SEC1 family (605 aa)
     
 
  0.821
SNAP30
Qb+Qc-SNARE, SNAP33-family (271 aa)
     
 
  0.819
SNAP29
Qb+Qc-SNARE, SNAP33-family (269 aa)
     
 
  0.819
PP1S138_10V6.1
annotation not available (263 aa)
     
 
  0.819
PP1S115_78V6.1
Predicted protein (760 aa)
     
 
  0.813
SYP3A1
Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type (357 aa)
     
 
  0.809
SYP3A2
Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type ; Belongs to the syntaxin family (355 aa)
     
 
  0.809
BET1A2
Qc-SNARE, BET1-family (123 aa)
     
 
  0.807
BET1A1
Qc-SNARE, BET1-family (125 aa)
     
 
  0.807
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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