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STRINGSTRING
PP1S226_23V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S226_23V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S226_23V6.1Predicted protein (276 aa)    
Predicted Functional Partners:
PP1S87_162V6.1
annotation not available (566 aa)
     
 
  0.907
PP1S80_63V6.1
annotation not available (577 aa)
     
 
  0.907
PP1S31_248V6.2
annotation not available (1224 aa)
     
 
  0.876
PP1S136_10V6.1
Predicted protein (1223 aa)
     
 
  0.876
PP1S641_1V6.1
Predicted protein (807 aa)
     
      0.845
PP1S80_154V6.1
Predicted protein (162 aa)
       
      0.845
PP1S54_233V6.1
Predicted protein (1580 aa)
       
      0.845
PP1S149_14V6.2
Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (187 aa)
       
      0.845
PP1S47_242V6.1
Predicted protein (753 aa)
       
 
  0.837
PP1S39_105V6.1
Predicted protein (431 aa)
     
 
  0.825
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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