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STRINGSTRING
PP1S227_66V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S227_66V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S227_66V6.1Predicted protein (518 aa)    
Predicted Functional Partners:
PP1S12_40V6.1
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (426 aa)
 
  0.999
PP1S47_214V6.1
Predicted protein (646 aa)
   
  0.991
PP1S188_15V6.1
Predicted protein (646 aa)
   
  0.991
PP1S303_31V6.1
annotation not available (91 aa)
 
 
  0.979
PP1S123_144V6.1
Predicted protein (642 aa)
 
   
  0.970
PP1S34_50V6.1
Predicted protein (273 aa)
   
 
  0.962
PP1S21_393V6.1
Predicted protein (276 aa)
   
 
  0.962
PP1S78_143V6.1
Isocitrate dehydrogenase [NAD] subunit, mitochondrial (425 aa)
 
 
  0.925
PP1S83_44V6.1
Isocitrate dehydrogenase [NAD] subunit, mitochondrial (388 aa)
 
 
  0.925
PP1S152_81V6.1
Predicted protein (367 aa)
 
 
  0.925
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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