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PP1S228_19V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S228_19V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S228_19V6.1Predicted protein (2672 aa)    
Predicted Functional Partners:
CHR1512
SNF2 family DNA-dependent ATPase (1649 aa)
   
        0.529
CHR1536
SNF2 family chromodomain-helicase (1463 aa)
   
        0.529
CHR1504
SNF2 family DNA-dependent ATPase (1567 aa)
   
        0.529
CHR1519
SNF2 family chromodomain-helicase (1632 aa)
   
        0.529
PP1S93_123V6.1
Predicted protein (1839 aa)
   
        0.515
CHR1544
SNF2 family DNA-dependent ATPase (1855 aa)
   
        0.515
PP1S341_67V6.1
Annotation not available (988 aa)
   
        0.513
PP1S236_78V6.1
Annotation not available (996 aa)
   
        0.513
CHR1514
SNF2 family DNA-dependent ATPase (2967 aa)
   
        0.513
PP1S223_99V6.1
Annotation not available (3092 aa)
   
        0.513
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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