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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S228_19V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S228_19V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S228_19V6.1annotation not available (2672 aa)    
Predicted Functional Partners:
PP1S62_236V6.5
annotation not available (420 aa)
           
  0.887
PpMET1
DNA (cytosine-5)-methyltransferase; Cytosine-specific methyltransferase ; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family (1565 aa)
     
   
  0.600
PP1S161_120V6.1
annotation not available (531 aa)
           
  0.552
PP1S7_208V6.1
annotation not available (696 aa)
           
  0.530
PP1S34_402V6.1
Predicted protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (600 aa)
           
  0.530
PP1S28_103V6.1
annotation not available (620 aa)
           
  0.530
PP1S204_106V6.1
Predicted protein; Glutamate dehydrogenase ; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (579 aa)
           
  0.530
PP1S143_156V6.2
Glutamate dehydrogenase ; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (530 aa)
           
  0.530
PP1S142_146V6.1
Predicted protein; Glutamate dehydrogenase ; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (529 aa)
           
  0.530
PP1S71_244V6.2
Predicted protein (796 aa)
     
   
  0.525
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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