• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
DXS1 protein (Physcomitrella patens) - STRING interaction network
"DXS1" - 1-deoxyxylulose 5-phosphate synthase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DXS11-deoxyxylulose 5-phosphate synthase (729 aa)    
Predicted Functional Partners:
PP1S73_243V6.2
Predicted protein (485 aa)
 
 
  0.977
PP1S62_157V6.4
annotation not available (485 aa)
 
 
  0.977
PP1S312_21V6.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (251 aa)
   
   
  0.920
PP1S291_43V6.1
Predicted protein (408 aa)
   
 
  0.885
PP1S25_208V6.1
Predicted protein (145 aa)
   
 
  0.885
PP1S159_68V6.3
Predicted protein (438 aa)
   
 
  0.885
PP1S33_37V6.1
Predicted protein (158 aa)
     
        0.885
PP1S177_33V6.1
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids (426 aa)
     
   
  0.794
PP1S323_86V6.1
annotation not available (304 aa)
   
 
  0.776
PP1S149_51V6.2
Predicted protein (426 aa)
   
   
  0.771
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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