STRINGSTRING
PP1S22_50V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S22_50V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S22_50V6.1Predicted protein (2742 aa)    
Predicted Functional Partners:
PP1S74_120V6.1
Predicted protein (2186 aa)
     
        0.763
PP1S427_1V6.1
Ribosomal protein (216 aa)
     
      0.684
PP1S40_297V6.1
Ribosomal protein (216 aa)
     
      0.684
PP1S18_121V6.1
Ribosomal protein (216 aa)
     
      0.684
PP1S87_39V6.1
Predicted protein (862 aa)
     
        0.564
PP1S11_334V6.1
Predicted protein (140 aa)
     
        0.564
PP1S94_163V6.2
Predicted protein (359 aa)
     
      0.540
PP1S43_41V6.1
Annotation not available (62 aa)
     
      0.524
PP1S196_76V6.1
Annotation not available (351 aa)
     
      0.524
PP1S137_165V6.1
Ribosomal protein (353 aa)
     
      0.524
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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