STRINGSTRING
PP1S230_73V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S230_73V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S230_73V6.1Predicted protein (249 aa)    
Predicted Functional Partners:
PP1S111_160V6.1
Predicted protein (393 aa)
   
   
  0.560
PP1S80_16V6.1
Photosystem II reaction center psb28 protein (201 aa)
   
        0.472
PP1S311_70V6.1
Photosystem II reaction center psb28 protein (205 aa)
   
        0.467
PP1S12_309V6.1
Predicted protein (495 aa)
   
          0.431
PP1S160_127V6.1
Predicted protein (421 aa)
     
   
  0.415
PP1S13_123V6.1
Predicted protein (265 aa)
     
   
  0.415
PP1S34_386V6.1
Annotation not available (307 aa)
           
  0.414
PP1S110_9V6.1
Predicted protein (239 aa)
           
  0.414
PP1S28_391V6.1
Predicted protein (541 aa)
     
   
  0.408
PP1S457_21V6.1
Predicted protein (381 aa)
           
  0.408
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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