STRINGSTRING
PP1S233_4V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S233_4V6.1" - Beta-amylase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S233_4V6.1Beta-amylase (605 aa)    
Predicted Functional Partners:
PP1S8_30V6.1
Predicted protein (554 aa)
         
  0.938
PP1S44_268V6.1
Annotation not available (666 aa)
         
  0.938
PP1S253_27V6.1
Predicted protein (1006 aa)
         
  0.906
PP1S117_77V6.1
Predicted protein (672 aa)
         
  0.906
PP1S223_59V6.1
Predicted protein (544 aa)
         
  0.903
PP1S13_335V6.1
Predicted protein (580 aa)
         
  0.903
PP1S7_147V6.1
Predicted protein (485 aa)
         
  0.903
PP1S526_11V6.2
Predicted protein (570 aa)
         
  0.903
PP1S148_45V6.1
Annotation not available (472 aa)
         
  0.903
PP1S200_23V6.1
Annotation not available (983 aa)
         
  0.901
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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