STRINGSTRING
PP1S236_47V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S236_47V6.1" - Annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S236_47V6.1Annotation not available (344 aa)    
Predicted Functional Partners:
PP1S98_157V6.2
RecA (435 aa)
     
  0.981
PP1S412_17V6.1
RecA (460 aa)
     
  0.981
PP1S129_197V6.1
Annotation not available (449 aa)
   
0.974
PP1S42_140V6.1
Rad51B protein (342 aa)
   
0.974
PP1S31_236V6.1
Rad51A protein (342 aa)
   
0.974
PP1S137_214V6.1
Annotation not available (325 aa)
     
0.971
rpl16
Ribosomal protein L16 (561 aa)
     
 
  0.965
PP1S18_235V6.1
Predicted protein (716 aa)
   
  0.962
PP1S69_54V6.1
Predicted protein (703 aa)
   
  0.957
PP1S114_188V6.1
Predicted protein (754 aa)
   
  0.957
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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