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GTB1501 protein (Physcomitrella patens) - STRING interaction network
"GTB1501" - Transcription elongation factor SPT6 in Physcomitrella patens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GTB1501Transcription elongation factor SPT6 (1648 aa)    
Predicted Functional Partners:
PP1S50_181V6.1
Annotation not available (1070 aa)
     
 
  0.977
GTA1501
RNA polymerase II transcription elongation factor SPT5 (1060 aa)
     
 
  0.977
PP1S97_14V6.1
Predicted protein (480 aa)
     
 
  0.970
GTG1501
Transcription elongation factor SPT4; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (120 aa)
       
 
  0.956
PP1S295_46V6.1
Predicted protein (1014 aa)
   
   
  0.882
PP1S35_132V6.1
Predicted protein (87 aa)
       
 
  0.876
PP1S159_110V6.1
Annotation not available (394 aa)
       
 
  0.876
PP1S110_49V6.1
Predicted protein (395 aa)
       
 
  0.876
PP1S29_171V6.1
Predicted protein (546 aa)
     
 
  0.867
PP1S15_366V6.1
DNA-directed RNA polymerase (771 aa)
     
 
  0.867
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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