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STRINGSTRING
PP1S23_215V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S23_215V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S23_215V6.1Predicted protein (465 aa)    
Predicted Functional Partners:
PP1S104_10V6.1
Predicted protein (374 aa)
           
  0.700
PP1S42_92V6.1
Predicted protein (410 aa)
           
  0.693
PP1S227_54V6.1
annotation not available (409 aa)
           
  0.680
PP1S51_193V6.1
annotation not available (526 aa)
     
 
  0.651
PP1S257_71V6.1
Predicted protein (523 aa)
     
 
  0.651
PP1S58_188V6.1
Predicted protein; Belongs to the PI3/PI4-kinase family (891 aa)
     
 
  0.645
PP1S62_116V6.3
annotation not available (307 aa)
     
   
  0.633
PP1S102_138V6.1
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (98 aa)
     
   
  0.620
PP1S31_2V6.1
Predicted protein (346 aa)
       
      0.619
PP1S58_262V6.1
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle (910 aa)
     
   
  0.614
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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