STRINGSTRING
PP1S242_101V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S242_101V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S242_101V6.2Predicted protein (437 aa)    
Predicted Functional Partners:
PP1S47_126V6.1
Predicted protein (693 aa)
 
 
  0.990
PP1S19_262V6.1
Predicted protein (792 aa)
   
 
  0.972
PP1S158_40V6.1
Predicted protein (2275 aa)
   
 
  0.950
PP1S13_171V6.1
Predicted protein (2276 aa)
   
 
  0.950
PP1S200_18V6.3
Predicted protein (375 aa)
   
 
  0.949
PP1S130_277V6.1
Annotation not available (553 aa)
     
 
  0.927
PP1S165_33V6.1
Predicted protein (732 aa)
 
 
  0.882
PP1S75_175V6.1
Predicted protein (720 aa)
 
 
  0.879
PP1S283_76V6.1
Predicted protein (726 aa)
 
 
  0.877
PP1S33_59V6.1
Predicted protein (826 aa)
   
 
 
0.824
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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