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STRINGSTRING
PP1S242_6V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S242_6V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S242_6V6.1annotation not available (1114 aa)    
Predicted Functional Partners:
PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome- mediated 3’-5’ exonucleolytic degradation, or deadenlyation- dependent mRNA decaping and subsequ [...] (1177 aa)
     
  0.993
PP1S104_102V6.1
annotation not available (1813 aa)
     
      0.892
PP1S89_218V6.1
annotation not available (358 aa)
     
 
  0.876
PP1S199_133V6.1
Predicted protein (297 aa)
     
 
  0.876
PP1S3_417V6.1
annotation not available (1860 aa)
     
 
  0.876
PP1S45_160V6.1
annotation not available (643 aa)
     
 
  0.875
PP1S33_131V6.1
Predicted protein (623 aa)
     
 
  0.875
PP1S2_784V6.1
annotation not available (623 aa)
     
 
  0.875
PP1S207_77V6.1
Predicted protein (178 aa)
     
 
  0.875
PP1S36_35V6.1
Predicted protein (493 aa)
     
      0.845
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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