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STRINGSTRING
PP1S249_38V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S249_38V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S249_38V6.1Predicted protein (182 aa)    
Predicted Functional Partners:
PP1S228_21V6.1
Predicted protein; Belongs to the AAA ATPase family (566 aa)
           
  0.634
PP1S14_328V6.1
Predicted protein (691 aa)
           
  0.609
PP1S70_284V6.1
Predicted protein; Belongs to the histidine acid phosphatase family (1098 aa)
       
 
  0.572
PP1S112_67V6.1
Predicted protein; Belongs to the histidine acid phosphatase family (1054 aa)
       
 
  0.572
PP1S165_48V6.1
Predicted protein (252 aa)
           
  0.569
PP1S194_11V6.1
Predicted protein; Belongs to the bacterial ribosomal protein bL17 family (157 aa)
         
  0.524
PP1S34_385V6.1
annotation not available (578 aa)
           
  0.524
PP1S66_193V6.2
annotation not available (595 aa)
       
 
  0.523
PP1S238_74V6.1
annotation not available (481 aa)
       
 
  0.523
PP1S1_421V6.1
annotation not available (353 aa)
           
  0.523
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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