STRINGSTRING
PP1S249_97V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S249_97V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S249_97V6.1Predicted protein (810 aa)    
Predicted Functional Partners:
PP1S179_1V6.1
Predicted protein (342 aa)
     
  0.979
PP1S279_18V6.1
Annotation not available (1495 aa)
     
0.976
PP1S41_79V6.1
Annotation not available (1962 aa)
     
0.976
PP1S62_17V6.1
Annotation not available (797 aa)
     
  0.976
PP1S41_19V6.1
Predicted protein (874 aa)
     
 
    0.667
PP1S14_125V6.1
Predicted protein (881 aa)
     
 
    0.667
PP1S29_169V6.1
DNA-directed RNA polymerase (665 aa)
     
 
    0.655
PP1S79_74V6.1
Predicted protein (324 aa)
     
 
    0.649
PP1S105_41V6.3
Annotation not available (254 aa)
     
 
    0.635
PP1S270_56V6.1
Predicted protein (177 aa)
         
    0.635
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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