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PP1S254_31V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S254_31V6.1" - Protein RER1 in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S254_31V6.1Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment (193 aa)    
Predicted Functional Partners:
PP1S86_196V6.1
annotation not available (237 aa)
     
 
  0.936
PP1S80_170V6.1
Predicted protein (241 aa)
     
      0.800
PP1S16_358V6.1
annotation not available (259 aa)
     
      0.800
PP1S167_98V6.1
Predicted protein (224 aa)
     
      0.800
PP1S137_86V6.1
Predicted protein (260 aa)
     
      0.800
PP1S132_62V6.1
Predicted protein (230 aa)
     
      0.800
PP1S10_393V6.1
Predicted protein (265 aa)
     
      0.800
PP1S79_91V6.1
Predicted protein (420 aa)
       
 
  0.792
PP1S25_261V6.1
Predicted protein (549 aa)
       
 
  0.792
PP1S158_19V6.1
Predicted protein (548 aa)
       
 
  0.792
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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