STRINGSTRING
PP1S254_51V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S254_51V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S254_51V6.1Predicted protein (298 aa)    
Predicted Functional Partners:
PP1S313_104V6.1
Predicted protein; Plays a role in vesicular protein sorting (795 aa)
     
  0.983
PP1S456_14V6.1
Predicted protein (809 aa)
     
  0.983
PP1S75_108V6.1
Predicted protein (184 aa)
     
  0.983
PP1S11_114V6.1
Predicted protein (184 aa)
     
  0.983
PP1S115_80V6.1
Predicted protein (377 aa)
     
  0.976
PP1S61_292V6.2
Annotation not available (114 aa)
     
 
  0.812
RabG13
Rab7/RabG-family small GTPase (206 aa)
     
 
  0.812
RabG11
Rab7/RabG-family small GTPase (206 aa)
     
 
  0.812
RabG12
Rab7/RabG-family small GTPase (206 aa)
     
 
  0.812
PP1S286_36V6.1
Predicted protein (298 aa)
         
 
0.800
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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