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STRINGSTRING
PP1S254_73V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S254_73V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S254_73V6.2Predicted protein (284 aa)    
Predicted Functional Partners:
PP1S13_387V6.1
Predicted protein (232 aa)
           
  0.771
PP1S63_52V6.3
Predicted protein (497 aa)
         
  0.530
PP1S316_17V6.1
Predicted protein (243 aa)
           
  0.526
PP1S303_55V6.1
Lysine--tRNA ligase (637 aa)
           
  0.526
PP1S226_56V6.1
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (348 aa)
           
  0.479
PP1S111_153V6.1
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (406 aa)
           
  0.479
PP1S215_25V6.1
Predicted protein (181 aa)
           
  0.463
PP1S17_380V6.1
Predicted protein (309 aa)
           
  0.463
SYP4A2
Qa-SNARE, SYP4/Tlg2p/Syntaxin 16-type ; Belongs to the syntaxin family (322 aa)
     
   
  0.446
SYP4A1
Qa-SNARE, SYP4/Tlg2p/Syntaxin 16-type ; Belongs to the syntaxin family (322 aa)
     
   
  0.446
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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