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STRINGSTRING
HAF1502 protein (Physcomitrella patens) - STRING interaction network
"HAF1502" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HAF1502annotation not available (2081 aa)    
Predicted Functional Partners:
PP1S185_43V6.1
annotation not available (1510 aa)
     
 
  0.993
PP1S167_49V6.1
annotation not available (1413 aa)
     
 
  0.993
TAFV1501
TFIID and SAGA complex subunit (673 aa)
     
 
  0.987
PP1S303_26V6.1
Predicted protein (499 aa)
     
 
  0.986
PP1S307_70V6.1
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription (149 aa)
       
 
  0.985
CHR1523
annotation not available (1663 aa)
     
 
  0.978
PP1S304_7V6.1
annotation not available (1197 aa)
     
 
  0.978
PP1S54_134V6.1
annotation not available (544 aa)
       
 
  0.961
PP1S519_2V6.1
Predicted protein (178 aa)
       
 
  0.960
PP1S190_89V6.1
annotation not available (943 aa)
     
 
  0.959
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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