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STRINGSTRING
PP1S256_34V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S256_34V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S256_34V6.1Predicted protein (493 aa)    
Predicted Functional Partners:
PP1S240_99V6.1
Predicted protein (609 aa)
     
 
  0.962
PP1S86_196V6.1
annotation not available (237 aa)
     
   
  0.615
PP1S40_279V6.1
Predicted protein (311 aa)
           
  0.599
PP1S92_5V6.3
Predicted protein (343 aa)
           
  0.581
PP1S290_6V6.1
Predicted protein (343 aa)
           
  0.581
PP1S179_67V6.1
Predicted protein (338 aa)
           
  0.581
PP1S174_90V6.1
Predicted protein (383 aa)
           
  0.581
PP1S285_41V6.1
annotation not available (822 aa)
     
   
  0.532
PP1S386_21V6.1
Predicted protein (1428 aa)
           
  0.531
PP1S11531_1V6.1
Predicted protein (300 aa)
           
  0.531
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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