STRINGSTRING
p1 protein (Physcomitrella patens) - STRING interaction network
"p1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
p1Predicted protein (158 aa)    
Predicted Functional Partners:
PPM2
MIKCC MADS-domain protein PPM2 (348 aa)
       
      0.621
PpMADS1
MIKCC MADS-domain protein PpMADS1 (348 aa)
       
      0.621
PPM1
MIKCC MADS-domain protein PPM1 (354 aa)
       
      0.621
Sep2.1
Predicted protein (249 aa)
     
   
  0.541
Sep2.2
Predicted protein (249 aa)
     
   
  0.541
Pa
Predicted protein (118 aa)
     
   
  0.519
Pb
Predicted protein (119 aa)
     
   
  0.519
PP1S80_16V6.1
Photosystem II reaction center psb28 protein (201 aa)
     
        0.499
PP1S311_70V6.1
Photosystem II reaction center psb28 protein (205 aa)
     
        0.499
PP1S71_358V6.1
Annotation not available (268 aa)
     
        0.468
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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