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PP1S25_170V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S25_170V6.1" - Branched-chain-amino-acid aminotransferase in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S25_170V6.1Branched-chain-amino-acid aminotransferase ; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family (438 aa)    
Predicted Functional Partners:
PP1S123_144V6.1
Predicted protein (642 aa)
   
  0.983
PP1S130_272V6.2
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate (449 aa)
       
  0.949
PP1S370_61V6.1
Threonine dehydratase (670 aa)
   
 
  0.934
PP1S169_130V6.3
Predicted protein (405 aa)
   
 
  0.899
PP1S207_68V6.1
Predicted protein (467 aa)
   
 
  0.867
PP1S47_214V6.1
Predicted protein (646 aa)
   
  0.865
PP1S188_15V6.1
Predicted protein (646 aa)
   
  0.865
PP1S152_53V6.1
Predicted protein (379 aa)
   
  0.824
PP1S49_246V6.1
Predicted protein (540 aa)
   
  0.759
PP1S152_35V6.1
Predicted protein (552 aa)
   
  0.759
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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