• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PAFC1501 protein (Physcomitrella patens) - STRING interaction network
"PAFC1501" - Paf1 complex protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAFC1501Paf1 complex protein (1019 aa)    
Predicted Functional Partners:
PAFA1501
Paf1 complex protein (609 aa)
     
 
  0.999
PAFD1501
Paf1 complex protein (642 aa)
     
 
  0.999
PAFB1501
Paf1 complex protein (631 aa)
     
 
  0.998
PP1S14_240V6.1
annotation not available (465 aa)
     
 
  0.997
GTA1501
RNA polymerase II transcription elongation factor SPT5 (1070 aa)
     
 
  0.995
PP1S144_35V6.1
annotation not available (1060 aa)
     
 
  0.995
GTB1502
annotation not available (1833 aa)
   
 
  0.980
GTB1501
annotation not available (1648 aa)
   
 
  0.980
GTC1501
FACT complex subunit (1060 aa)
     
 
  0.980
PP1S97_14V6.1
Uncharacterized protein (480 aa)
     
 
  0.977
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (8%) [HD]