STRINGSTRING
PP1S260_21V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S260_21V6.1" - Predicted protein in Physcomitrella patens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S260_21V6.1Predicted protein (171 aa)    
Predicted Functional Partners:
PP1S25_361V6.1
Predicted protein (476 aa)
       
  0.823
PP1S142_119V6.1
Annotation not available (445 aa)
       
  0.823
PP1S301_54V6.1
Predicted protein (589 aa)
              0.794
PP1S167_52V6.2
Chloroplast Toc64-1 (592 aa)
              0.794
PP1S83_234V6.1
Uridine kinase (530 aa)
              0.652
PP1S488_8V6.1
Uridine kinase (520 aa)
              0.652
PP1S370_24V6.1
Uridine kinase (486 aa)
              0.652
PP1S19_94V6.1
Predicted protein (482 aa)
              0.652
PP1S196_105V6.1
Annotation not available (1014 aa)
              0.612
PP1S137_132V6.1
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1008 aa)
              0.612
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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