STRINGSTRING
PP1S264_27V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S264_27V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S264_27V6.1Predicted protein (369 aa)    
Predicted Functional Partners:
PP1S70_211V6.1
Predicted protein; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking exp [...] (111 aa)
     
  0.973
PP1S35_148V6.1
Predicted protein; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking exp [...] (266 aa)
     
  0.973
PP1S160_80V6.2
Predicted protein (147 aa)
     
  0.973
PP1S303_26V6.1
Predicted protein (499 aa)
       
  0.972
PP1S65_237V6.1
Predicted protein (3914 aa)
       
  0.971
TAFV1501
TFIID and SAGA complex subunit (673 aa)
       
  0.971
PP1S75_43V6.1
Ubiquitin carboxyl-terminal hydrolase (621 aa)
       
  0.968
PP1S432_11V6.1
Predicted protein (631 aa)
       
  0.963
PP1S32_21V6.1
Predicted protein (318 aa)
       
  0.963
PP1S18_124V6.1
Annotation not available (630 aa)
       
  0.963
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
Server load: low (8%) [HD]