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STRINGSTRING
PP1S269_3V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S269_3V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S269_3V6.1Predicted protein (460 aa)    
Predicted Functional Partners:
PP1S20_121V6.1
annotation not available (436 aa)
     
 
  0.991
PP1S100_108V6.1
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit (520 aa)
     
 
  0.991
PP1S53_169V6.1
Predicted protein (312 aa)
     
      0.968
PP1S80_199V6.1
Predicted protein (377 aa)
     
 
  0.958
PP1S264_34V6.1
Predicted protein (399 aa)
     
 
  0.958
PP1S119_137V6.1
Predicted protein (394 aa)
     
 
  0.958
PP1S6_203V6.1
annotation not available (854 aa)
     
   
  0.945
PP1S409_13V6.1
Predicted protein; Belongs to the DEAD box helicase family (847 aa)
     
   
  0.945
PP1S28_215V6.1
Uncharacterized protein (475 aa)
     
   
  0.944
PP1S431_4V6.1
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (232 aa)
     
 
  0.943
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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