STRINGSTRING
PP1S279_1V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S279_1V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S279_1V6.1Predicted protein (385 aa)    
Predicted Functional Partners:
PP1S392_44V6.1
Predicted protein (153 aa)
           
  0.491
PP1S27_121V6.1
Predicted protein (360 aa)
           
  0.491
PP1S184_139V6.1
Predicted protein (370 aa)
           
  0.429
PP1S98_233V6.1
Predicted protein (310 aa)
           
  0.407
PP1S80_179V6.1
Predicted protein (413 aa)
           
  0.407
PP1S7_216V6.1
Long-chain-alcohol oxidase ; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation (797 aa)
           
  0.407
PP1S71_140V6.1
Annotation not available (947 aa)
           
  0.407
PP1S59_73V6.1
Uncharacterized protein (292 aa)
           
  0.407
PP1S58_61V6.1
Predicted protein; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation (775 aa)
           
  0.407
PP1S48_250V6.1
Long-chain-alcohol oxidase ; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation (778 aa)
           
  0.407
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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