STRINGSTRING
PP1S280_51V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S280_51V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S280_51V6.1Predicted protein (272 aa)    
Predicted Functional Partners:
PP1S78_15V6.1
Predicted protein (210 aa)
     
  0.807
PP1S314_30V6.1
Predicted protein (210 aa)
     
  0.807
ArfB23
Arf6/ArfB-family small GTPase (192 aa)
     
  0.805
ArfM12
Arf6/ArfB-family small GTPase-like protein (210 aa)
     
  0.805
Arl1A2
Arl1-family small GTPase (182 aa)
     
  0.805
Arl15L
Arl15_9_10-family-like small GTPase (120 aa)
     
  0.805
ArfA12
Arf1_5/ArfA-family small GTPase (181 aa)
     
  0.805
PP1S70_131V6.1
Arf1_5/ArfA-family small GTPase (181 aa)
     
  0.805
ArfA15
Arf1_5/ArfA-family small GTPase (181 aa)
     
  0.805
Arl5A1
Arl5-family small GTPase (184 aa)
     
  0.805
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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