STRINGSTRING
PP1S284_6V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S284_6V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S284_6V6.1Predicted protein (548 aa)    
Predicted Functional Partners:
PP1S429_29V6.1
Predicted protein (396 aa)
     
   
  0.643
PP1S41_162V6.1
Predicted protein (394 aa)
     
   
  0.643
PP1S263_33V6.1
Predicted protein (122 aa)
     
   
  0.529
PP1S14_288V6.1
Predicted protein (121 aa)
     
   
  0.529
ppabci11
ATP-binding cassette transporter, subfamily I, member 11, ABC component protein PpABCI11 (573 aa)
           
  0.525
ppabci15
ATP-binding cassette transporter, subfamily I, member 15, ABC component protein PpABCI15 (573 aa)
           
  0.525
PSBS
Photosystem II 22kDa chloroplast protein (280 aa)
     
   
  0.512
PP1S235_42V6.1
Annotation not available (179 aa)
     
   
  0.509
PP1S66_48V6.1
Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (182 aa)
     
   
  0.475
PP1S66_47V6.1
Ribulose bisphosphate carboxylase small chain (182 aa)
     
   
  0.475
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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