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STRINGSTRING
PP1S286_37V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S286_37V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S286_37V6.1annotation not available (169 aa)    
Predicted Functional Partners:
PP1S29_152V6.1
annotation not available (492 aa)
   
   
  0.907
PP1S291_29V6.1
Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily (463 aa)
   
   
  0.907
PP1S40_57V6.1
Predicted protein (426 aa)
   
        0.668
PP1S294_50V6.1
Predicted protein (428 aa)
   
        0.668
PP1S66_7V6.1
annotation not available (480 aa)
   
   
  0.659
PP1S21_400V6.1
annotation not available (1225 aa)
     
 
  0.640
PP1S351_43V6.1
Predicted protein (716 aa)
           
  0.611
PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome- mediated 3’-5’ exonucleolytic degradation, or deadenlyation- dependent mRNA decaping and subsequ [...] (1177 aa)
         
  0.590
PP1S41_93V6.1
Predicted protein (219 aa)
           
  0.577
PP1S15_59V6.1
Predicted protein (218 aa)
           
  0.577
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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