STRINGSTRING
PP1S28_24V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S28_24V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S28_24V6.1Predicted protein (221 aa)    
Predicted Functional Partners:
PP1S80_92V6.1
Predicted protein; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine, an essential post- translational modification only found in mature eIF-5A factor (339 aa)
     
      0.681
PP1S123_81V6.1
Predicted protein (352 aa)
           
  0.588
PP1S169_50V6.1
Predicted protein (480 aa)
     
      0.551
PP1S77_113V6.1
Predicted protein (1316 aa)
     
   
  0.448
PP1S51_131V6.1
Predicted protein (331 aa)
     
   
  0.448
PP1S45_255V6.1
Predicted protein (291 aa)
     
   
  0.448
PP1S371_2V6.3
Predicted protein (330 aa)
     
   
  0.448
PP1S262_52V6.1
Predicted protein (304 aa)
     
   
  0.448
PP1S129_63V6.1
Annotation not available (760 aa)
     
   
  0.448
PP1S28_170V6.1
Predicted protein (85 aa)
     
   
  0.423
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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