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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S28_419V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S28_419V6.1" - Uncharacterized protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S28_419V6.1Uncharacterized protein (416 aa)    
Predicted Functional Partners:
Cry1b
AtCRY1/HY4-like cryptochrome blue light photoreceptor protein (413 aa)
       
 
  0.585
CRY1a
Blue light photoreceptor cryptochrome; Cryptochrome 1a (727 aa)
       
 
  0.585
PP1S87_175V6.3
Predicted protein (229 aa)
           
  0.538
PP1S80_141V6.1
Predicted protein (165 aa)
           
  0.538
PP1S359_8V6.1
Predicted protein; Belongs to the protein kinase superfamily (976 aa)
     
 
  0.476
PP1S245_46V6.1
Predicted protein (917 aa)
     
 
  0.476
PP1S87_126V6.1
annotation not available (417 aa)
           
  0.469
PP1S11_341V6.1
Predicted protein (586 aa)
           
  0.469
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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